What about Quantum Mechanics?
Quantum Mechanics opens the door for miracles. There is a concept of quantum fluctuations where particles can appear out of nowhere temporarily or the amount of energy can change in a point in space. See Quantum fluctuation (Wikipedia).
We do not understand this process but indeed on the quantum level the particles can appear and disappear with given probability.
I like @Daniel's answer that Jesus follows the rules of physical world and acts on the mattern according to Quantum Mechanics. In the physical sense it means he is able to manipulate the energy which in turn is possible only for the Creator of the matter and energy.
