The 95 These are not 95 points of criticism of Catholic doctrine. That is, Luther was not identitifying 95 different doctrines and/or practices of the Catholic church that he disapproved of. Really there are all about one practice of the Catholic church: the selling of indulgences, i.e. telling people that they could buy a "reduced sentence" in purgatory by giving money to the church.
I don't claim to be any sort of expert on the practices of the Catholic Church today, but to the best of my knowledge they are no longer selling indulgences, directly or indirectly. You might find individual cases where a priest or other representative of the church says or implies that someone can win some favor with God by making a big donation, but these are individual mistakes or abuses and not Catholic policy. Therefore, I think pretty much none of the criticisms in the 95 Theses apply today.
BTW, many of the 95 Theses are not, of themselves, criticisms of the Catholic church. For example #1, "Our Lord and Master Jesus Christ, when He said Poenitentiam agite, willed that the whole life of believers should be repentance." Or #94, "Our Lord and Master Jesus Christ, when He said Poenitentiam agite, willed that the whole life of believers should be repentance." I haven't counted how many are criticisms of church practice and how many are points Luther is trying to establish along the way.
Also note that Luther carefully worded many to avoid overtly criticizing the Catholic church and especially the pope. For example #48, "Christians are to be taught that the pope, in granting pardons, needs, and therefore desires, their devout prayer for him more than the money they bring."