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The Patriarch Joseph had two sons Manasseh, and Ephraim:

Genesis 46:20 KJV And unto Joseph in the land of Egypt were born Manasseh and Ephraim, which Asenath the daughter of Potipherah priest of On bare unto him.

Israel gave Joseph an extra share among his brothers in:

Genesis 48:22 KJV Moreover I have given to thee one portion above thy brethren, which I took out of the hand of the Amorite with my sword and with my bow.

Both Manasseh and Ephraim were given equal shares of the promised land, when it was divided among the tribes. Manasseh also was given an area outside the promised land.

Joshua 14:4 KJV For the children of Joseph were two tribes, Manasseh and Ephraim: therefore they gave no part unto the Levites in the land, save cities to dwell in, with their suburbs for their cattle and for their substance.

Joshua 22:7 KJV Now to the one half of the tribe of Manasseh Moses had given possession in Bashan: but unto the other half thereof gave Joshua among their brethren on this side Jordan westward. And when Joshua sent them away also unto their tents, then he blessed them,

In the Revelation chapter 7 Manasseh and Joseph are listed as tribes, but Ephraim is not.

Rev 7:4 through 8 KJV

And I heard the number of them which were sealed: and there were sealed an hundred and forty and four thousand of all the tribes of the children of Israel. Of the tribe of Juda were sealed twelve thousand. Of the tribe of Reuben were sealed twelve thousand. Of the tribe of Gad were sealed twelve thousand. Of the tribe of *Aser***were sealed twelve thousand. Of the tribe of ***Nepthalim* were sealed twelve thousand. Of the tribe of *Manasses ***were sealed twelve thousand. Of the tribe of ***Simeon* were sealed twelve thousand. Of the tribe of Levi were sealed twelve thousand. Of the tribe of Issachar were sealed twelve thousand. Of the tribe of Zabulon were sealed twelve thousand. Of the tribe of Joseph were sealed twelve thousand. Of the tribe of Benjamin were sealed twelve thousand.

Is the Tribe of Joseph supposed to be Ephraim?

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I'd like a good accurate answer to this as well. –  1Up Apr 15 at 23:32
    

2 Answers 2

There are actually 14 tribes if you consider Ephraim and Manasseh as additional tribes, but this is an abberation in my opinion since Ephraim inherited his father's portion so there were 13. Levi was not given land, his offspring being the priests.

As you indicated Joseph received extra share of land which I suspect is what allowed Manasseh to separate from Ephraim as a 13th tribe. A tribe is essentially a group of people who live together on a single plot of land so by logic if you separate into another plot of land you naturally create a new tribe.

Ephraim however was the oldest and inherited his father's share. Although the oldest son inherited his father's house it was still his father's house and everything bestowed on that house also belonged to the father as long as he was alive (the house was never divided).

Most people today don't realize that. Being the oldest was a mixed blessing. Sure you inherited everything - but that included accountability and responsibility for the house and it's occupants, and deference to his father as long as the father lived.

Interestingly Dan is also missing from Revelations (Ephraim is represented via the mention of Joseph - imho). This makes the count in Revelations back to 12 tribes. Why is Dan not mentioned is a more intriguing question to me.

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Ephraim actually was the younger, When Israel put his hands their heads he reversed them and put his right hand on Ephraim's head instead of Manasseh's. And indicated that Ephraim would be the stronger of the two. –  Bye Apr 16 at 2:19

In context, the list refers to the remnant that was protected from the '6th seal'. Here are two brief commentaries on it:

Resources » The IVP New Testament Commentary Series » 

John's list does not match exactly any of the traditional lists of the tribes of
 Israel (for example, Gen 35:23-26; 49:1-28; Deut 33:6-25), either in the names or in
 the order of the names. Most conspicuously, it is a messianic or distinctly Christian
 list in that it begins with Judah, the ancestor of David and of Jesus, the "Root of 
David" (5:5). Just as the elder's voice had announced earlier "the Lion of the tribe  
of Judah" (5:5), so now John heard a list of tribes announced beginning with the tribe 
of Judah. In each case, however, what John immediately saw was something quite  
different from what was announced. Instead of "the Lion of the tribe of Judah" he had 
seen "a Lamb, looking as if it had been slain" (5:6), and now instead of 144,000 from 
all the tribes of Israel he sees a great multitude that no one could count, from  
every nation, tribe, people and language, standing before the throne and in front of 
the Lamb (v. 9).

http://www.biblegateway.com/resources/ivp-nt/144000-Unnumbered-Multitude

Matthew Henry Commentary
 In this list the tribe of Dan is omitted, perhaps because they were greatly addicted  
to idolatry; and the order of the tribes is altered, perhaps according as they had 
been more or less faithful to God. Some take these to be a select number of the Jews  
who were reserved for mercy at the destruction of Jerusalem; others think that time 
was past, and therefore it is to be more generally applied to God’s chosen remnant in 
the world; but, if the destruction of Jerusalem was not yet over (and I think it is 
hard to prove that it was), it seems more proper to understand this of the remnant of 
that people which God had reserved according to the election of grace, only here we 
have a definite number for an indefinite. 

http://www.biblegateway.com/resources/matthew-henry/Rev.7.1-Rev.7.12

The term Joseph may have been used here as a reminder that Joseph was the actual son of Jacob. Joseph's inheritance was then split between his two sons, Ephraim and Manasseh. As Ephraim received the primary inheritance, his name can be interchangeable with his father Joseph, while Manasseh would require a specific call out.

The commentaries indicate that Dan may have gone unprotected from the '6th seal' for punishment of sin. Tribes suffering various degrees of punishment was not uncommon in the Old Testament. Conversely, changing Manasseh to Dan, all tribes are represented.

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